NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193729_1055045

Scaffold Ga0193729_1055045


Overview

Basic Information
Taxon OID3300019887 Open in IMG/M
Scaffold IDGa0193729_1055045 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1606
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025536Metagenome / Metatranscriptome201Y
F042486Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0193729_10550452F025536AGGVSASAPALAKQSRPALAMRLADPAATLTYVSFIFGLLLVVFPLSFPRIIVQNWQNARLTPIMILFTVSLNLGLYLGVAHQRSSKPGILASACLGSAPVFLLAGLNFLLQATIAHTLSGNIPNALARVDEEILAHTYFALIAAIFGPFLLIRLGQQFRKTNP
Ga0193729_10550453F042486N/AMVALGIHELTADWASGKWLLWIGLYLSLGILVPWAMTRAWAHQHHSPLQPRLRQVFQNGELGLVSLMLAISVIWDLQKSQYTSYTIALGSVFLAMTGIMAGAVWIESYCRRSTGIRFRPDRAWRDSRNLTLLVFSLAIVTEILLDRFGKVTAL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.