NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193729_1012216

Scaffold Ga0193729_1012216


Overview

Basic Information
Taxon OID3300019887 Open in IMG/M
Scaffold IDGa0193729_1012216 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3853
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9225Long. (o)-106.9538Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005371Metagenome / Metatranscriptome403Y
F012705Metagenome / Metatranscriptome278Y
F030185Metagenome / Metatranscriptome186Y
F035093Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0193729_10122164F012705GAGGMKENFQLKDLVLNRNTKEDGTIRRVYDTNGVAMYEVAVPQKRDTWEAGFYISDWAEDVLQLSNNELLKSSRAVHAFRAY
Ga0193729_10122165F030185N/AVSKSGIKLGATVRLRAQSGEIVEGRVVHLWEEKSVPMVRVASGDLVYNVPAKMLVDETKS
Ga0193729_10122167F005371N/AMGFLAKSRIATVLVVVAASSALFAQNGGPEKLQDHASIPDARHIIGQSVVATERSLQARDRYTFVERDQDRRLDSQGQLKSEKIDVTRMILVNGARFEQLVERNGQLPSAEEQKKLNQDFEKLKHETPQERTARLGKEQENRSFLRDVVEGFDFCLLGEEVLGGRPTYVFQAIPHPGYHARGKYGNMFSNVEGKLWIDKSDFGWIKVEGQVTQSFSLGLFVARVQRGSRIVLEQKNVGDAVWVPQRLEVRASARILFLKSLAVERILTYSDYRPEADGPYSVSR
Ga0193729_10122168F035093GGAMAGQAAAGQIPAPWVALAQKPVAPAISVFRAESKILLAPSFLLSQVRRNTLAHTSLRFSGLDERDQVLERLSPVIKVKTLILTQVSLPLVQLWDGKLELDAFQSTLRIQNVQFGALGYGAVPDFPLPQQNFPGGSRSVHLSGVSLNFNFGRVEGTRRPTQAWRCVPRIVAALLN
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