Scaffold Ga0193729_1008149

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1008149
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4843
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022986	Metagenome / Metatranscriptome	212	Y
F077256	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_10081495	F022986	AGAAG	MPALALHSFSKAIEIPARLHNQPLDAWQTSARLTTLLSRFGIRVLGDLHGRKVVDFAWEKNCGPKTLYELDLLARRAQSQNGKASCNGHRRGYVRASYTPSHGFSATGTERATARMQQDAASFAIPESICHFSFSELPITTRLANVVRAIGARSLGDLNGRSAFEMLQYKACGWGTISEIQQLIERAGSGEFDIDEVEETTAAAELLSLLEQGLAKLPLRDRQFVLARIGGEIVSARSPRADLLCLSYAEIGRRYGLTRARVHKVFANTLDRLRKIWGPRVPRLLEVIKWRCLSEICPLTPQFLEKWSARLQPSRRGEQRVII
Ga0193729_10081496	F077256	N/A	VREAGGQITVAEAYRSLSHPGGRDYRRLTVEKFLQMLRSVEGTAVEFKDPKVPIVSLRPSNRGVLFRDVPGHGKSSTARKVHSNLSAIQFFKNGSCERHAVGRR