Scaffold Ga0193729_1002888

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1002888
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8506
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000673	Metagenome / Metatranscriptome	944	Y
F002076	Metagenome / Metatranscriptome	596	Y
F011792	Metagenome / Metatranscriptome	287	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_100288810	F000673	AGGA	MTKPRIERSLLFPNKEFRERVRKASKDRGFRSEQAFILAACEREIRRGDETESVTQFEARIAATLTNLAKQGQHLQTLVEAQVAITDVFLKYVITCVVEPPEDALPAARVRARLRYDKLIRAAANELSNKNRDTLRAMVVDY
Ga0193729_10028885	F011792	GGA	MNQLVNSALLAYYSKSGEGKLKKPAKGLGSSVHSYDTMSEGERRELHQMLAQVSAMQPVPFEAEEPNGTYYEYDRNLKATVKVTPDGERTPVEKLETSFEPTRPKGPRKAAHEGIAS
Ga0193729_10028889	F002076	GAG	MEHFRQCLNKLAATPPQKTAALIRSLLPGIETALRCGHGLKEIWVALGGEGLQMSYRVFHQTVSRSRNAKKPTATNSWGKQVKPPEAREPQGTKVEAVEERDPFANLRRLELENRPGFHWRGTRNVKTPVPGTEDSNEKSNR