Scaffold Ga0193729_1000605

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1000605
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18911
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007987	Metagenome / Metatranscriptome	341	Y
F023404	Metagenome	210	N
F045431	Metagenome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_100060520	F023404	GGAGG	MPKGVRKSITIPGLLAATVKQRCREFGHSIFTPYAVELVCYDLRSDAKHSITLEIARDTQPAQDAVDRELVARYRPGQPRKGLLVQMVDRIERLQSVAAGSRHDLPLPPLSAAAERVTFPFEIWRLVDVRWKELGYRSLSAYITGLIRYDLLVSGPHSSITADCRSKLQRKLTRKTLADRRKGRRRKILLDHLIEEAEGRPIPERELERVKARIARELRRISFSPGSAKIPTHTISFQREPIRTSSRGASTVKVERSAASNTFTARSER
Ga0193729_100060521	F007987	GGAG	MAKQTSNNAIAQAEQDCSFSATTIAALLFLAAKFPHRQFNSNELCVLSGIGRTAMSQIKNATDSPFSLGKCTLQRLDGWLAKHPGFKQQ
Ga0193729_100060522	F045431	N/A	MTNAQLKKLVNEAVTLHRDIVAQSERLKIMKADLVREARLHENDFMPTNNGGSRWTATGTDGCIARVNFPAPALMPLINSESETFDQVLTVAGECVDRLFESVYYLRPVAEFREEVSQVLPKRDARQLIELCETKCAPRVSFETAETKTA