Scaffold Ga0193729

Basic Information
Taxon OID	3300019887 Open in IMG/M
Scaffold ID	Ga0193729_1000021 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019887 Open in IMG/M

Scaffold ID

Ga0193729_1000021 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	76346
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (63.10%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

76346

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (63.10%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9225	Long. (^o)	-106.9538	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9225

Long. (^o)

-106.9538

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004298	Metagenome / Metatranscriptome	445	Y
F006413	Metagenome / Metatranscriptome	374	Y
F006646	Metagenome / Metatranscriptome	368	Y
F007316	Metagenome / Metatranscriptome	353	Y
F018294	Metagenome / Metatranscriptome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_100002132	F006413	AGGAGG	MLRKMFSLGALVVVVVTFGVGNASAQPKNSHSPAVTHSNGGWTDGFSDGRL
Ga0193729_100002147	F006646	AGGA	MSGQLLLPYMALWASLLRALLVQARIAPPLCGRCGRKLERSQLGETICNGH
Ga0193729_10000215	F007316	AGGAG	VRVVGIVAMAAAAVIVVAFSGTSSASPKARKVCGGVPAYTTGPEVVFGRPATLAAAQKLQKQVMAQGFTFTSIEVGCNEFRVVIRGYDTFATAVAIQEEARKSTFHPTVECYEAPDKNGELEVAMAHEPNLDSANATVSLAASYGLVNAQLEADPCGGYEVMMKGFTDAAQANAFAAEAYSVGFNAHLEPDS
Ga0193729_10000217	F018294	N/A	MLTLQAILLTTSLLMVLAMVGSLMFLATMRGRIEPEPIAVESVDLPL
Ga0193729_100002173	F004298	N/A	MRAESEVWQALLRRKGLSVTELAGELGVTRQHAHRLLTGRRPAESQREDLEHALALGTPTAGKPLFAIGELEDNGELEIVPAGDTQPLFANREVATDVARALDVASLHVCVLPVWPAYGWRNLVAFHAAWGADPEPRKVFVVDDGDEDLPLDAVVGEIRAGLDATLRGRAKARDPAYLSEVESRLQRLN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193729_1000021

Overview

Ecosystem & Geography

Associated Families

Sequences