Scaffold Ga0193729_1000011

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1000011
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 104689
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (74.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002205	Metagenome / Metatranscriptome	584	Y
F002375	Metagenome / Metatranscriptome	566	Y
F013779	Metagenome / Metatranscriptome	268	Y
F023302	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_1000011118	F002375	GGAGG	MHHGRRRHHRGLGRRWYDRENVLERLENYQRDLEQELADVSDLITRLQAGEQPGQPQPQS
Ga0193729_100001125	F023302	N/A	MRGVLVAAVLLFALMLVIKDGRASRNLGLTGHCQTIPAPAGQEGVWEACDPGKLEGAPDLSRQGCKSVKLVGKREYWRCPASIKSSHNT
Ga0193729_100001157	F013779	AGGAG	MQHRRHRIQGFLAFLSRENAQAKPDKTVTLAVISGSSFLALTRFSENGASAVTSLVRLFT
Ga0193729_100001161	F002205	GAG	MQEPLDFALIKRLQEVLDRRPATETELRSLKEQAEGWQRAVSGQLQASERRLLRLNANPASSLAQIASELRRVEKLRPQLDEVGSLLADLENRARELRTEWLLSQATSAKTPSRRRDGRR