Scaffold Ga0193729_1000008

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1000008
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 116119
• Total Scaffold Genes: 137
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (64.96%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002544	Metagenome / Metatranscriptome	550	Y
F011933	Metagenome / Metatranscriptome	285	Y
F011980	Metagenome / Metatranscriptome	285	Y
F017054	Metagenome / Metatranscriptome	243	Y
F020630	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_1000008103	F002544	AGGGGG	MMEGLDTSRVAPDEYVEFRAAGDPVKGEFHCSACGYGVTIVRALPICPMCGGSCWERTAWSPFGRASTVV
Ga0193729_100000812	F011980	AGGAG	MTGSHAEEIVGDYFESDDWAEQLGTDTEEEPDLDLPPLPPLRPEAA
Ga0193729_100000834	F011933	GAGG	VKAAAIILVSVGTVGVLVTFVIMRRKLEALRRLKDGE
Ga0193729_10000086	F020630	AGGA	MEQVVDLATRKSGSIAVALVWDRRDETLRVFAYDGSTGEEIVVPVSGAEAAEVYRHPFAYTARSLKTKLSAGE
Ga0193729_100000899	F017054	AGCAG	VRALSPVERNERRRLRRRQETIRWSIRVLVVGLVFALGVALGQAIQDNPQPGRTLTFDRTLHIPTRGQQGSTITP