Scaffold Ga0193729_1000003

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1000003
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 189436
• Total Scaffold Genes: 207
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 123 (59.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F002111	Metagenome / Metatranscriptome	592	Y
F002206	Metagenome / Metatranscriptome	584	Y
F003724	Metagenome / Metatranscriptome	472	Y
F008327	Metagenome / Metatranscriptome	335	Y
F009190	Metagenome / Metatranscriptome	322	Y
F050032	Metagenome / Metatranscriptome	146	Y
F062284	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_1000003162	F002206	N/A	MCLAPDGGEGGPSDGATKMRAVTELARSERTSRLLVARLDALASVASQISHVEAERLVELASIATMHAVALETLQAEQAEAIWREAHARHPQLPEVVVDLPERLAA
Ga0193729_1000003177	F009190	N/A	MPEEKRPDLRPQLRESLAWYEEVLGRIEEGAIVAPGERERLMEEASAVAHLLDLLGSSADDPAN
Ga0193729_1000003197	F062284	GGCGG	VSLRDRAFHRHAEAVLEHELLRARRQLAELSEERRSAVEEVAADIVAATVDSMLEESRREPALARALDSIYGPEPAWEPRALSWASD
Ga0193729_1000003199	F000280	AGAAGG	MAQNQDDQTRPARPLFGYRDVGESVRHGRNAMTRAWIVLAILIVVYLAWTLTVYFVEPGL
Ga0193729_1000003200	F002111	AGAAG	MAEISVLPFVSYSSMTETIIPGAQWPAVYSSLQALKGHVQEYPGCQSFDVFVRAEGDGDVLVHCYTTWDTPGQLEVFLERGYTVERLLADVGSELSASRSLVMEKVF
Ga0193729_1000003201	F008327	AGGAGG	MSMPTGDTPEKVQQFYLYLNGHQETTRPVESWHVDWLSVAWLWGFVFALLAVLFLWVRQYRTTRQRSGIYPVDSFGGWTTEGAGPATGFFLLFTVLIVGFAVALIVGHLVWGQKF
Ga0193729_100000322	F050032	GAGG	MAAEQRLGDGFRKLDDLVLQLKGLVLVRGLREQCGADEGELLMYGAEIDRVRGQLATFARNGT
Ga0193729_100000327	F003724	AGGAGG	MKEAAVLMSFLRHDPVGQRFGVGALVLAWFALAWTSLAAALAVPLLLVVSELVRRRREDHMPIVDDLDDLY