Scaffold Ga0193729_1000002

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1000002
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 258348
• Total Scaffold Genes: 274
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 192 (70.07%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001160	Metagenome / Metatranscriptome	762	Y
F002575	Metagenome / Metatranscriptome	547	Y
F003192	Metagenome / Metatranscriptome	502	Y
F004735	Metagenome / Metatranscriptome	426	Y
F007625	Metagenome / Metatranscriptome	348	Y
F008979	Metagenome / Metatranscriptome	325	Y
F009618	Metagenome / Metatranscriptome	315	Y
F009713	Metagenome / Metatranscriptome	314	Y
F013046	Metagenome / Metatranscriptome	275	Y
F080664	Metagenome	115	Y
F093596	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_1000002136	F093596	GGAG	MVVPGRVVRQLAIGGLRVRRRRAARLMFVSVANRGNVTVQLRGCVTALLVRHGHQLARLSPSAQRPLLPGARTLITLRYGGPVRGPVTAVVQVRLGPGVRVVEHRYRIRL
Ga0193729_100000220	F008979	AGG	MQSMESIVCPVCGFIAETTDASRLRTVWADHLLGGCGDDVAAITTAMESCIEQRQELWRSGNTEEVPALTVTIDLLWEALRYARLAEPPAAAA
Ga0193729_1000002200	F009713	AGGAGG	MSRARLIYFAVFAIIIATALLPALLQILPDGMHDGGEI
Ga0193729_100000222	F080664	GGA	VLRKTFVSLLAVLATLVVVPSVLAALNSPSVFGADFTHGNVVTGGWASPEGIEARRLRVGVPVGQSVTIANQGSLPAAYRLSARTAGDPRLVARLSVVATRRADGATIFSGPVTSLRSLDLGRFQAGEQETLQLRVVLTSTGTNARDNVLQGRDASVAFTWTATQA
Ga0193729_1000002247	F002575	GAGG	VAKQPDADVQAREFIDRVVESHRENGYGAKVPKKRYEEAVARVAASFRGLTAASKDRAA
Ga0193729_1000002260	F001160	N/A	MQVENVIAFVVEQEPAGLEIRVNFGVFAGRDATSAELDDLGKLLVPEAGEISIVGEQRHDISEDAEIVLHQVRVSVSPEMVPDHREDRTQLCERLVTLAEIWARQCINERRAEIADP
Ga0193729_100000232	F004735	GGAGG	MARQEGGQCSIGAMRRPLAWLLGGFALFGFLRRRREAPAAPDPRADELRRKLAEARSIVEERDEFEAAEVTIDLAEPAPVDPGSRRRAVHDAGRATVDRMRDL
Ga0193729_100000256	F003192	AGGAG	MSTTPPEQPTTPQQPGGAYGSPGPNVNFNLSALMPTPGNAELAVYIVATFIVTIVTLADAAVNAPAWVDFFKWATGAYLISRGIAKASRVLER
Ga0193729_100000260	F009618	AGGA	VRLRFRRRWVVAAAAIAALSLTLASAAGAESYIYWWQRNMTPSDRGTDSLTARNHTYNELYFGANAGWKSEVWEVTPAGYRHFDKWCAGNCFNAHPGYYYTYAYCANRDGSTHFVYECKDQW
Ga0193729_100000261	F007625	GGAG	MLAAAATAGLITQLGLGGSGKVQIGNGSVSALAQAARAADSLPRSVLEYPFAERNFSSPNGGGSRLLQTQGSLRLYGVPGKEGMLCLVEVDTAAETAGGACADRSVLRTGSIYMADIREDGSRLVVGLVGDGHTYAEADGRRTPVENNAFVLDGVEGRDFTVGSAAASQHIDIGG
Ga0193729_10000029	F013046	AGG	MKGDDVEESQFGVSSTIAGEDEYVEFWPAGTLAKGQFACTACGNRVTVHNVLPRCMVCGERLWERADWSPFARSEAPG