Scaffold Ga0193729_1000001

Overview

Basic Information

• Taxon OID: 3300019887
• Scaffold ID: Ga0193729_1000001
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 310542
• Total Scaffold Genes: 338
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 228 (67.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9225
  • Long. (^o): -106.9538
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000658	Metagenome / Metatranscriptome	954	Y
F006556	Metagenome / Metatranscriptome	370	Y
F011429	Metagenome	291	Y
F014453	Metagenome / Metatranscriptome	263	Y
F036158	Metagenome / Metatranscriptome	170	Y
F042648	Metagenome / Metatranscriptome	158	Y
F050787	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193729_1000001135	F000658	GGCGG	VLACLACGLAGSVPSLGLSRPAPGLASAQQACGRLEFISGLEAVFGRRKTHQQALAFRTQVTGRGFVNANIIEGCDGFRVVVRGIDTFDVGVDLQSEARREGFAVTLECIQAKPLGRLEAIFGHGRDRPTATAIVNRADAAGFPGVQLRSDPCGGFEAYLAGFEDQREADAFVVEAKARGFDVVLERN
Ga0193729_100000114	F011429	GAG	VDGFLIAAIAFALPLSVGATGLGRPKVVLGLGAVVACGWAVALVNGRAQDAHGHHLVPVWFLAGLVAILYVLWCGGLWVGTRLKRARAR
Ga0193729_1000001172	F006556	N/A	MPRRLVPAVLVLSALLSDVGGAHGLALAFLLCAIPAAFVLVLDCYGDVLEGRSGAVRPALAGLSLALLVLSAALRSPAVLGGVPTLAESVLVLALLLYSVVLLGGLLPGTRGVPESA
Ga0193729_1000001246	F036158	N/A	VLPGCGGGSSKALSKEEYAAKADAICGKYNQQTKALGSPKTLADLATVADQTLPILDHALKDFGKLQPPASEKALADQWVAQVTNLREDLQRIRDKAKAGDIKAVQAVVPRAQADNSRSNQLATKLGMSVCNKD
Ga0193729_1000001265	F050787	GGCGG	MVERTGDELLAMPLRLHGIQLGRPVDLLLDREARRVVGLDILCGDEVHRFLPLPTAAVGDKEIRILSPLVLLEERELDFYRSQTLALSRLRGGAVERNGRSVGQLRDVIVDEDGRLVAAITDEKRVPFEDGLRFAPRRRTAA
Ga0193729_1000001290	F014453	GGAGG	MKGFALLVAALAGAALLYVTTAVGSQRAGPTRSEFNALKKQVATLKKDDAAIQTVINACFIGAVPVLRVNNYEARAADGSTVVTTGLDVADAGKTPAVYLLDVGVACANVINTPLLKFHGFKLARPAATQR
Ga0193729_100000140	F042648	N/A	VTRFPLLRSFRPSLWGKVLPELDRAATTLARQQQGTVSNPLTATIGGLKARRYDIDYAGEGKQLVERIAFVFRAKTEYLLLCRYERGGDTEACDGLLTSFKLAAA