Scaffold Ga0193727

Basic Information
Taxon OID	3300019886 Open in IMG/M
Scaffold ID	Ga0193727_1002103 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019886 Open in IMG/M

Scaffold ID

Ga0193727_1002103 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8371
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (69.23%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

8371

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (69.23%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9871	Long. (^o)	-107.0011	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9871

Long. (^o)

-107.0011

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048424	Metagenome / Metatranscriptome	148	Y
F059437	Metagenome / Metatranscriptome	134	Y
F065202	Metagenome / Metatranscriptome	128	Y
F082044	Metagenome / Metatranscriptome	113	Y
F102028	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193727_10021031	F065202	N/A	AKLMRAVAHGFKPTGGGPPVAVAKEFMHADMKKSAHKTKEGRADRKRDMNAWAEGK
Ga0193727_100210312	F082044	GAG	MSVTLKLVHEEGIRLRQQAAHKIDHTKETSIEKIDSLTGEKTIEKKVEFSHTSVDWRFVKRPASDGKIVEECQQDEDARRVDSNGRKMQLGTYTVHVTAGMNNLVIERKGKVTPFSFKNNAIRNQVRVQHQRLIDSGRQTKDKKPVHEWKNDGAAKYIPPNTFDGVFVGDGQRAILDEMP
Ga0193727_10021035	F059437	N/A	MVIGNRYLQGSPVLPYAQVKAYPNTDLFMDLQFVDHTNTPVIPTSISIEIDDITNSVVMAGPTTLNPAGAVGGVPFSYQAFSATMTLQVVATAWQMTFPYIGSQLCQVGMQFTAIDSATGQPFTSTAVIAVIELCALATVSGLAF
Ga0193727_10021037	F048424	N/A	MMLTEELEAVAKQTRVLRDRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVAFKQEISDGPPVLGPGGKVMQFAKSKLSGKTLWFEDGPETGAIIPMQVKPGDVVEFSFRNIALVDFDRVGFPGIGDLAFVWQKAIYSVDPDESLNECLMWQQSAGYDRKGNFMSGAEDWHRA
Ga0193727_10021038	F102028	AGGA	MSEGYGNLGKTSETIPGAPKHPWGKWPKIKPESVAPLRDDKPDLYNYQPTRFVSRDEARARGWKHFWTGELCVTGHRAARYVANGSMCVDCIRVEKGQLPVYGKGVPELEAARRRNYTQKNTAAATGPAPPSAAERSFLTKYAELKDFAIAADACGRSEAEFLAILSWNTTFRDAVNRLEESIGAARTQQVTVEFDWTEEKKQAFLITYANTADVKQALRSVGATNVQFHKELSCNGDFQRGFDDANNIARMVFDHAASAAATKGDARMLGRIAANFFPEKFGENLKMDLKVTQNLSLEQAHDQITHLLSRFDRQGLLPAPDFADDSVEEAEYQLVEPTRVEQIGQDPERQSEDAGSDPNSDLVSGSE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193727_1002103

Overview

Ecosystem & Geography

Associated Families

Sequences