Scaffold Ga0193747_1001087

Overview

Basic Information

• Taxon OID: 3300019885
• Scaffold ID: Ga0193747_1001087
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7681
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8925
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001645	Metagenome / Metatranscriptome	658	Y
F080467	Metagenome / Metatranscriptome	115	N
F097176	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_100108713	F080467	N/A	MLSEKPLLTASVKRHSLDAIDVENDAELDALTAQVLAAGNKIAESERAEMIRKGIIDEHGNLLKTELPEDMRKDADRDFGG
Ga0193747_100108715	F097176	N/A	GGVVQSSWLDLSLLIEGKLLSQKQDFRAEGCARAEQETEEKKAVRDQIGDQVKQRIQ
Ga0193747_10010878	F001645	AGGAG	MALLRAPSKQPKTTNLQVRLEEEVRRNLDKYAEFIDANPSYVVSEALKMLFRKDDDFKRWAGQHANEDSKDQIQGEALTKTA