NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1001087

Scaffold Ga0193747_1001087


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1001087 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7681
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001645Metagenome / Metatranscriptome658Y
F080467Metagenome / Metatranscriptome115N
F097176Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_100108713F080467N/AMLSEKPLLTASVKRHSLDAIDVENDAELDALTAQVLAAGNKIAESERAEMIRKGIIDEHGNLLKTELPEDMRKDADRDFGG
Ga0193747_100108715F097176N/AGGVVQSSWLDLSLLIEGKLLSQKQDFRAEGCARAEQETEEKKAVRDQIGDQVKQRIQ
Ga0193747_10010878F001645AGGAGMALLRAPSKQPKTTNLQVRLEEEVRRNLDKYAEFIDANPSYVVSEALKMLFRKDDDFKRWAGQHANEDSKDQIQGEALTKTA

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