Scaffold Ga0193747

Basic Information
Taxon OID	3300019885 Open in IMG/M
Scaffold ID	Ga0193747_1000484 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019885 Open in IMG/M

Scaffold ID

Ga0193747_1000484 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13211
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13211

Total Scaffold Genes

13 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (92.31%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8925	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8925

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002416	Metagenome	561	Y
F009773	Metagenome	313	Y
F013685	Metagenome	269	Y
F035446	Metagenome	172	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_100048412	F035446	GAG	MTIRERGNIWPVISVAAGAFFVLAVMPLILHRQQSGQMATVDAQVTIGDSGNEPLTNATAPTYRWPDSEVPRTAERLRDLTAVAIAASSNIVEGAMRRTPLRDANDILNRIAQRQLIPAAWLTQQPGILQTGHSTIHIRYAPQNATLEVISVPNERKDGPAMLIRIPDAENTGVGPRYFESMQLDGIVYPSPFAPIAQIVASGWQPRLFKQSQLPDEQRAQLEQWVKNTMAK
Ga0193747_10004842	F013685	AGGA	MKTFLRQLLLGVLVGLILAPSTAQAQFTVFDPAQYSLQIERQIEEANRWLERVKQYSEEINKLAEQLSTMKGVLGQAEKLVLHNDTLTRTMAQIGQTVRDVFALKRAIETMVISRLNMIKSIKTRLMNGIFDPDADLRDFEDYLRNSIGRQEQDKIATMNRIAMFDATLARLYHDLQTAQARQAGAAEEMKQAKDKLDAELAKPQAEQCAHCISDLKLEIASCEKMIADLDTQITNLSTQIEDRVKRYNLTMEERVRIANRVKATDEAWDKLNIVKDGIFDAIQRGGVPSPSPGQP
Ga0193747_10004844	F009773	GAGG	MRSRPVRPNIYLPVVRFGVADSDWFTVLLISCTGYLLPVPFGITVLYVPLQMWTWLLVTAGSIAFFNYIRIGRRPRWLQHRVKALFVHHRHCRSIPNGKGRGFTRPWIIDSEVTDRSALQHAQATTAIRCLIEHNSQFQEAYEEKWNTLLLTTN
Ga0193747_10004845	F002416	AGGAG	MNTLNELISFPGLENSRAARFGQRLIAIAFGIKGLHGVIGAVLLMVFGVASVSAQTPTGSFFNGNSSQLGNSLRSVTFFLAAAMIIAGIIFIAVGIVTSGLRESLSTWKFITGAACFAFGGVCAAVYAFSQGDSVPLDNTF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193747_1000484

Overview

Ecosystem & Geography

Associated Families

Sequences