Scaffold Ga0193747_1000062

Overview

Basic Information

• Taxon OID: 3300019885
• Scaffold ID: Ga0193747_1000062
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67878
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (83.05%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8925
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005666	Metagenome / Metatranscriptome	393	Y
F007493	Metagenome / Metatranscriptome	350	Y
F012578	Metagenome / Metatranscriptome	279	Y
F019976	Metagenome / Metatranscriptome	226	Y
F026411	Metagenome / Metatranscriptome	198	Y
F027294	Metagenome / Metatranscriptome	195	Y
F069965	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_100006214	F007493	AGGTGG	VIGTSSALIGAVVLLVLILVWIRADSTSRRLPSTLDEWLPDHGDAVEVCPPEFVSQIFSGQDLAFISRLESPDLKRHFLRERSAVALLWVQQTSVAIRRIMRRHLEASRLSEDIEFAMEARIFLQYAQLRLICGVLFPLIGLAGPQKLHGIALYVDSLTQRIGNVLREFESAAGTREMDG
Ga0193747_100006217	F027294	AGG	MPQEGEVPNMSVFSGFAILITVVLVSLGIFVLCDSIARRSAEVSDSVLAGAVLFSLALILLYFLPRPALT
Ga0193747_100006218	F026411	N/A	MKGQEQKKKSGLEGASPGTECRAEFIFYARNQTSQLRSVEVLGDYACDFRRPDWAHRWTDWNFGQNPYLNLFLCAKHARDLGLM
Ga0193747_10000622	F005666	GGAG	MKVPSLRILLPIAALLCISGSNPAHAQAPLEPAQMSSRTAFYLIWHGVPGPEARKANSLLALWDDADFAPVRSAIASNLIGSPTEKSPKEKLTPEEFQEFAALLENSFTLGYLSEPAKRAVSNGSAAADSKSPAWNGMFFVYDRTGKEVLLAKAILRLRAAGKEVPLLSQVTIGSVQVLRAEGKNGVSYWAEHGKYAVSAGERSVMEEILGRLDGRVSGAASLAQSAAYREAQANLGSGLLEFFLRIPDLENLATDSKAGNFQVRPLLDAARLDAVHSLSGHITFEGAKTHVQAAILGDAALGTPFDIWAAGQPSSASLSFVPADAVSYTSGRLNFPGIYDTVKRVARVAFPQVQQGSADLFDTLAQTRFGMPVADALGLLTGEFASMQTSASMDSTKQVYFLGIRKKPETLKLIRTVFSDQLTSEHNEGDVTFLKISLGGKQSIPGVAQWNFFNLAVTKDMILGANRIESVREVLSNRAHASTAAGLATVPQFQAGRARSPENLNGLSYFDFQRIDWQGLKDRWIEEAKKGPVAKTVSASKNSAPSTAPDWLARIDPQVFARHLHYSSSVSWKDSKGIHWDQWVE
Ga0193747_100006220	F069965	GAGG	LGFLALSVTSAFRIPTGGAPDPAGACGIRVTPTRSESPTIPGVFSRVSSSSGPAYPLRDILLRMPLANPPHRISLFCIFCAFSSAAAVAQSTHYSVKLEPDFERQLLRGDETIEFQADAGEIEWQKQGGLRVVSANIANGEVTVAEQAMRVRLRSGGRHSLKLKYTAAAGRGIQWFAGAAPQREYSRDSGFATAFYCDAWMVCDNSPGQRATLRLEIVIPSKEGGNMGFRAVGPGRRGREWRSRDGDHFVFEQGDPVQTYLFSFGAARLALDGMFSIYAQRMDANKAAFAKTADAYDFLRAPASVDPLNSHYTQAFMPGRSMGQEAAGMVLVSQDDLSDLVDKMTGN
Ga0193747_100006246	F019976	GGAGG	MATLLSKSIYRSRFARDVLLGLMALCGAASPLLGQETVAGKFTLTESTRLGKSFLPAGAYTFSIEPVGILQSVSSIQGARQIVQVIVRPETKAGPVAAIFAMATRSARALDASKLVLAPVNNGIAMHSMYLDKQGLVLDFDWWSPKDKTQILAQAARPEPASGSKATD
Ga0193747_100006258	F012578	GGAG	VTAFSNSFECRRRAAVPAACMAILCAALLDATAARPDEQPSDSVGVIDGEAIAVNGPMSVEVVHGQAKTVLRSGSDVRVKSGAARIDLVEGGQISICGPAHLLVLKSGGSLTIALDTGTIHAHIERELSLTIYTPQIQAQAVAIGDGPQDLLLGFDTAGAMCIRANRGAVRLEQQLTGQSVLVPQAGDVLLLNGQLGSLRTSPGNCACDLQAAKGTPPPQPEVGQLATTEDVRKRAPDARPNTPPATVETSPAREEPVYQVFMPPLIYDANAKVQPEIDPRMIVLVRRVRVRPTLIFQGRVEGVAVAVTPVPSPTSTPAAGANAPKPEVPVSVSFVDRVRNLVRKLWPSGS