Scaffold Ga0193747_1000055

Overview

Basic Information

• Taxon OID: 3300019885
• Scaffold ID: Ga0193747_1000055
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75352
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8925
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011161	Metagenome	294	Y
F026838	Metagenome / Metatranscriptome	196	Y
F030905	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_100005546	F030905	AGGAGG	MKDQYKYFRKSKPIVEVAIIGFVLATFDVLAQGCSLFNKAAWVALEVLRPVLLVAWQSAPGCLCEDSKFLQYVLQIGASIWPLLSVIAG
Ga0193747_100005549	F026838	GAGG	MFLYWLLLAVVFGYPQPESAKTEEQDAAQRQASLHYERYRQQAIRTNELAAHINSEADARAFVDAVADMFADSLPPSWATRGIRERIAHAEFEAVSDPLRQIPEQRIANVWNKYVREIGASEEAVVTVAEIHGIRDAAFAVGQVMWTRGTNQSAWTMPNYFAVGEDGKVAEGCRAVEALRVIYDLDRMFDNLRSARERLRKGIVASDAIKKILENTSTTPKTTAPGWWCG
Ga0193747_100005565	F011161	AGGAGG	MKETGFAFTLLAILLLSCGPAQAQKPAPKPALVTPAPDLSKLNIEKVLQQVQATNIHPNSQETSPLQVAADFLQLRPGQVNELEQLLQARQTTLVPLFQTAQALTQQLAVLLNSGGNPAQVGILVIQIHALQQQMAQAQQAFLAQFVAILDAEQLQKLQAVQIAAQLQPILPAFQPIFLF