NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1000055

Scaffold Ga0193747_1000055


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1000055 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)75352
Total Scaffold Genes70 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011161Metagenome294Y
F026838Metagenome / Metatranscriptome196Y
F030905Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_100005546F030905AGGAGGMKDQYKYFRKSKPIVEVAIIGFVLATFDVLAQGCSLFNKAAWVALEVLRPVLLVAWQSAPGCLCEDSKFLQYVLQIGASIWPLLSVIAG
Ga0193747_100005549F026838GAGGMFLYWLLLAVVFGYPQPESAKTEEQDAAQRQASLHYERYRQQAIRTNELAAHINSEADARAFVDAVADMFADSLPPSWATRGIRERIAHAEFEAVSDPLRQIPEQRIANVWNKYVREIGASEEAVVTVAEIHGIRDAAFAVGQVMWTRGTNQSAWTMPNYFAVGEDGKVAEGCRAVEALRVIYDLDRMFDNLRSARERLRKGIVASDAIKKILENTSTTPKTTAPGWWCG
Ga0193747_100005565F011161AGGAGGMKETGFAFTLLAILLLSCGPAQAQKPAPKPALVTPAPDLSKLNIEKVLQQVQATNIHPNSQETSPLQVAADFLQLRPGQVNELEQLLQARQTTLVPLFQTAQALTQQLAVLLNSGGNPAQVGILVIQIHALQQQMAQAQQAFLAQFVAILDAEQLQKLQAVQIAAQLQPILPAFQPIFLF

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