NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193747_1000017

Scaffold Ga0193747_1000017


Overview

Basic Information
Taxon OID3300019885 Open in IMG/M
Scaffold IDGa0193747_1000017 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)138330
Total Scaffold Genes127 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)96 (75.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8925Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005917Metagenome / Metatranscriptome386Y
F006948Metagenome / Metatranscriptome361Y
F044122Metagenome / Metatranscriptome155Y
F047610Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0193747_1000017100F044122GGAGMQVPTGRYEKRTAKTVTVELLRLDESGLNERTVTENVSPRGARVVTELICAPGKHVLVTAAEGGVKSLARVVYCQRVESTKFVVGLQLVVRVEEWGNPASRE
Ga0193747_100001771F006948GGAGGVRVKSVHIAVVSLLACAVSASHGSAQNPDTMMPEQSVAKGKQILSDLINALGGPGYTEVRESLCQGRRSQFGHNGEPLHPVLIDFSEYRRYPDKVRTEYISKGRNTILASLIGVDGLDFTHGGIVISLYNGDHGWTFDRSGVSELPAAAIGDFQEQVKRNVDNLLRLRLKEEGISIRFGGSDTVDLKPVDWIEISDSQERKFRLAVDRSTHLLVRSVVITKDEETQQINEDVSIYSNYQLKDSVWTPLQISREHNGRRAAQIFYDSCKFNPGFSDDIFDKSSLSKQGSQALVKKSKN
Ga0193747_100001779F005917GAGMLVRPHLPGYRWFHVFRNAAIRTGVYVGVCLTLVFTAWVVIANHAPFLERFALERNIAAAVILCFLAAVPIFRFLRFPGHFLASGLIAWLIFSLSYRALCTLFHGLSNRLSTFHVFMLGAVVYMILTTLCWIVATIWRARGANDTHPNHHAS
Ga0193747_100001798F047610GGAMGGLFVKTEVARDVDTTIRLDFLVQEGQIRAEAVVRHVKPGRGLGLKFTALTEEDGPRLTALMTRLRSLSQSRTNPK

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