Scaffold Ga0193747_1000014

Overview

Basic Information

• Taxon OID: 3300019885
• Scaffold ID: Ga0193747_1000014
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 146377
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 101 (80.80%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8925
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001189	Metagenome / Metatranscriptome	753	Y
F004417	Metagenome / Metatranscriptome	439	Y
F009891	Metagenome / Metatranscriptome	311	Y
F033926	Metagenome / Metatranscriptome	176	Y
F038173	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_1000014117	F009891	GGAGG	MSIINKPPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKIVLWRDRHFMNWRKQQQQAARKDAPTTATQKAQGKA
Ga0193747_1000014120	F033926	GGAGG	VKMVAIVLVAVLFGLQNTHLRTEKKTVPSYRAESSAYVVRGKDAWTYVTENRSFRFAEVLGDTGNYEAVLLLEEAYRNERTDGREGVQGNATVKAWTVKRDGERELRWTFQETGNEGDVEGRFFRVTAWGCCDIPTAYSYYNVLPAKKLYVSNSDLLKVWGDGDGPQAWRYVALGYADRNKFDQPPQLQYGTDKRVAQRFSLVSAREYYDAPQMYVATNEQLEKSLDLRGSPRSFLIVLKYQDGVELRIPVENDAIRPESATLPKGYALRLER
Ga0193747_100001452	F038173	GGAGG	MRTTAYLLAVFILASLPLPISVQAQKQLAQSPRIMSAKSIYFDDRTGVDAVAKRALNEIKKWGRFQIVQDRKMADLILLLSADQYKGGYIIMSGGQTGTIDVHGKIDVDPIPNYNKQAPVRYAYLRVIDPKTGENLWSDSHRWGGLLTGFNSVGARLVKELEEQTKK
Ga0193747_100001469	F004417	GGA	MPVDTRGLNQGHVGKRMRVELADCESLEIRLHELTVCAKPEPCCGITYILISTNRSDGKKDRNSAYWTVFGEIEKFKVLED
Ga0193747_100001499	F001189	N/A	LRPPLQYHQGVDKLLLLVFGPLVVAAALLVIATGIRRVIAKFRSQASPDQIKATYEGYLRRLLNPQPDAVERELGKLLPERLLQLYQDKSAIQSAGFQLETPGKKGRWSKRWPVYCFEPLDIESLNELPYEEELGPGFCFATTGRGSWYWIAASDQRVKDSPVVFLVYDGGGSHRKTVATSLQEFLNWPRLPIR