Scaffold Ga0193747

Basic Information
Taxon OID	3300019885 Open in IMG/M
Scaffold ID	Ga0193747_1000010 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019885 Open in IMG/M

Scaffold ID

Ga0193747_1000010 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	208076
Total Scaffold Genes	188 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	146 (77.66%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

208076

Total Scaffold Genes

188 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

146 (77.66%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8925	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8925

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000653	Metagenome / Metatranscriptome	959	Y
F001069	Metagenome / Metatranscriptome	787	Y
F001078	Metagenome / Metatranscriptome	785	Y
F001178	Metagenome / Metatranscriptome	756	Y
F011185	Metagenome / Metatranscriptome	294	Y
F039731	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_1000010123	F001178	AGGAGG	MMNDSEGLANQGIERILELSADAHIRRRGTVKDSPEFHRLTGEIAAHGKALELLTAMQELEEFYAMIDQLDVLACGQPVC
Ga0193747_100001024	F001069	GAGG	MQFLPGFTVQCINPQCEARGRWLRADATAPLGGDGHCPCCGDFLRNVPPPLGPRFRMRPRSLTARPPLRPRPR
Ga0193747_100001034	F001078	GAG	LAALSPLRLMLKGAFISVALLSLALVADSAAQSIVPDSTPAIGPARPDFFNRVVANQKKGEAALDLYERVERVETRKNPSDPAPPAIKILRVVPSGTGMFRIPVGDDGKPKDSAAYRADLESLARALTLLVNDAGSQRDALEKYAKKKKDRNDLIDATHNAFLFTFAAYEPRGDRVLSKYKMEPNPAFKPTSRFSAIFPKVRGLVWVDEASGELARVEGNVNEDISVGLFLGKIYKGSHFMQERYEFQPGLWLASFSQYDFDGRKLFSSFSVHERTFYSNYRYIGPPKEALAAIRQELGLAESDKPRADAADR
Ga0193747_100001035	F011185	GGAGG	MPRSLSFAMILTLFAAFSAAAQSQDRSAPAPPATSQDSTPPAETKKPKKVWTNENLSGANGAVSVVGDPKSKPKPASSKPANAQYLASVQKQLDKLQGEIADIDKQLVDLKNFREGEPSTSASGIKLNKSYEREPIEVQMRALQGKKKDLESKIDALLDEARKKGVESSELR
Ga0193747_100001061	F000653	AGAAG	VAEQRQLTKGKAALLLVLSAVGAIASATLLHGWHRYLGFAVVGIGLFVGFIRWNRRY
Ga0193747_10000108	F039731	AGGAG	MRRKVLAWTLFLGSLLLLNLAATPYSRAADAALISLRLTLLIVLSILVVRERWRNRHELPGKVAAANSDVGHRFLQRCRRWYHGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193747_1000010

Overview

Ecosystem & Geography

Associated Families

Sequences