Scaffold Ga0193725_1000233

Overview

Basic Information

• Taxon OID: 3300019883
• Scaffold ID: Ga0193725_1000233
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17624
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9866
  • Long. (^o): -107.0007
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001572	Metagenome / Metatranscriptome	669	Y
F088582	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193725_10002335	F001572	AGGAGG	MKRQLLTLAATLSLAGCATGAGYAGPEYVYAEPVEYEYVVPVDRVVVVTRDVLVTRGWTVYRVQRSGPNRIIWARRGDNDVVRIFATPRGQRVAVRGLWEERERGDRGKHKGWAKRGQPRDIITEIDVRLKSRG
Ga0193725_10002339	F088582	GAG	MTGWQDSWTFRIVDQDTGAAVPGVPVSVLESGGRAGGYWVSDSDGLVRIPKHDQPRLRLRVGLRNEEAIELDARSLPDDPIPLTAPRDIVVAATLASAGPADSLLHAVTAAQSQSGHVMRFARIGVLPKDRDITAAKSPDDMSVRYGLLIEIELVWQSLGAEAGATLYSISLGPGEEVKVAVSDGRWRKSLDARERPLQIVAKMVGARQIGDGMDAMPLDVCVAADLPSAAADTIKLLAERTTRTCEALRRRALGVTELDGEKPAGTPVRTLRNMRSEGVLTYHFVEPIERHRVIVRTPRFRPALLVPFRLPNIATREVVRRFGHAIRRNLLDRRLGADVDQVLGPDPVPAAAEQRVYAHIAAHLPYYSATIIAAADPAERFFALAKLRDPRGHPLTDVIENIVVDRVGNYVAFPLRSVADTTPEWRSALTASPAQPPRGSQEFTVTVPVPGVWLRSELLPARLATESDAGAEAVKPEADRTERRKRR