Scaffold Ga0193725_1000069

Overview

Basic Information

• Taxon OID: 3300019883
• Scaffold ID: Ga0193725_1000069
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34881
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9866
  • Long. (^o): -107.0007
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002381	Metagenome / Metatranscriptome	566	Y
F030725	Metagenome / Metatranscriptome	184	Y
F040038	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193725_100006928	F030725	GGA	VRSRPLVAGLTAGLLGSLVWLGCALTDVFDPPGPAANIVFVFSDSILSVGDTVPLVVVVRTAAGDLANPHLRVTSLDPGLLQVNARGDTLMALSQGRALLDVQLVSSVISGAAPDTVHAIRVRP
Ga0193725_100006931	F040038	N/A	MSRAGPMALAGLLLPAIVSAQGIELSGLVSVAHGDHRVDAGLGVERATGLLVGGAVRLRRRGIALELSGGAGHLTAVQGSGGIDRDVSQLAALAQFTPLPWLVLESGVTLRSFGTVLARQRWTLVRAGAEARVPLSGETFWAVGHAHLLPMVSVNGLPNAATSFDAGTGLAYRRGRFVFDLTYTLERCDFPSQGSTRRSEQLGTIALRGGVELRRR
Ga0193725_100006935	F002381	GGAGG	MRGLTLLIATILTFGYGFAAQAAMTIERAQTYARVARMVETVNPVTDANRVWYGGMLDPITVEAPAPPALKCSVA