Scaffold Ga0193707_1004235

Overview

Basic Information

• Taxon OID: 3300019881
• Scaffold ID: Ga0193707_1004235
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5111
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9514
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040281	Metagenome / Metatranscriptome	162	Y
F078484	Metagenome	116	Y
F104656	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193707_100423510	F104656	GGA	MKNPRFPALSFFSALLIGIGWTLIVIGILVLAFCAINLFSSSAADFGAVLTTAMTFGLVSLALVLIGLFTVTGGESIRVFLAIEANTHAWTSVVQRPE
Ga0193707_100423511	F078484	N/A	MIGGQLMNGKFLLFGRDEIANSLMRFVDRKIGEQRQGERRLAEQRTTKHRIQAKKSCIADARSYRVARRFPVLAVAQFDWKALIPTRRTYLFGIGWLKKRRNKHWLTAKQASY
Ga0193707_10042356	F040281	N/A	VKTILLAATALAALTGCQSATEKQRLEAEAQSSALANCARIRVVSSGCGGNSGLTEVYVDNMHKNHAVRATVRKHSQEGDDDTNYAIAEGGQLFIGCGGSGTSFDVVGCQVLKGEVEKGD