Scaffold Ga0193707_1000291

Overview

Basic Information

• Taxon OID: 3300019881
• Scaffold ID: Ga0193707_1000291
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16209
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9514
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016127	Metagenome / Metatranscriptome	249	Y
F073741	Metagenome	120	N
F091567	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193707_100029120	F073741	GAG	MLGVALAINYQRLQVRTNPEISQSPVLRRFKRNVAMRKFLPIAYLLTLLTGCATSNQVSNTARSSIEERLLISSFEQALATLDIHEFKGKTVTVDFYGLTSDKDFAKEFFTAWLEEQQVQIATDPKQAQLHLKVFAPVLAVDQGQSFVGAPAFTVPILGFVIPEIALFKNARHSGHTEVEVFTIDGGTGKFVDRSPPAIGETNYNDYTVLIVIHFTRSDMETRKWDWQPGS
Ga0193707_100029128	F016127	GGAGG	MRQRKVIKTTLGDLIVAVTDEVMPVIRNSVSAHMVVSWVISDVLTRQRQRDHERSRRKSQ
Ga0193707_10002915	F091567	AGGCGG	MYRTILIWTASFIFSGLIAGKTSFASDVNSSVGATTSISPSSESGQERRALQQLAVTLAAGGEAWRSFGGSNVDDETAKHPLDSTIPGMDCSVDEIADYVSCYGSPIASKAEAERRVTGLIDELQAALPSERWRGAETEPRVGSIRSYSCRDQDSDAQIDIDIALRWSPDEEISYVVTIFGWTAIAPQL