Scaffold Ga0193712_1021437

Overview

Basic Information

• Taxon OID: 3300019880
• Scaffold ID: Ga0193712_1021437
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1366
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9827
  • Long. (^o): -107.0102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048497	Metagenome / Metatranscriptome	148	N
F077595	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193712_10214372	F077595	AGG	MANDIVAIATAIKKIAFISIDEKTAGRCAPVSRKISYCDGLHFADAKDREQLLPPTAVVGYKSAGAAKDRSLAANIDADRALISFKEMPITHVEANHNALKVARGEIGGLAVEAATLINDFEGCQNPALLDIVEFGGFIWDPARNRGH
Ga0193712_10214373	F048497	AGGTGG	LLPTEDKLRHVALDVTAAVVGGNGSRARIVNPLHKVYTVADHKNGKAAYATMTLEHDFAFVLSGDTQTNGRYEALIENRP