Scaffold Ga0193712_1000002

Overview

Basic Information

• Taxon OID: 3300019880
• Scaffold ID: Ga0193712_1000002
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83913
• Total Scaffold Genes: 142
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (83.80%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9827
  • Long. (^o): -107.0102
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034408	Metagenome / Metatranscriptome	175	Y
F056282	Metagenome	137	Y
F061612	Metagenome / Metatranscriptome	131	Y
F074512	Metagenome	119	Y
F091541	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193712_100000253	F056282	AGAAGG	VIDKPVVGVQTDARPHPAGGKGARLSLNEVAERAWKARMSPRLRAWVTQVLDKAGVSTGGRRQKAQAVLDAFRKKVPYIADPVMGEFMATPEQSLCLDEGGLCFVGGDCDDHSIGLAAAMMSIGIPAMIIGASYRDPIDVPTHVFMAFQDDFKDWVRMDGTTKQAVGRVSPSRKEFWVEPGATAKDSGEGDFVGMSGASSGMLAAPVSLSDLRYPGIR
Ga0193712_100000256	F091541	AGGAG	MSKSIVGRPMKKFGQDQERPKRVPFGLGVPATDGTLAADAAQKCLRCSFGNIPVIEEVVWTIPLPLTSEEALSTLGDTVNLLSGSSSVPGVASIDSTFLINGILQTDILAQGIGVHVFCEPMSFSTIGNSFVAPATTVNPPPSPDVFTTNDLTNRAMSTSVTATGDNFGPAVFEFGADVWRAGWNFINAYQFQWKTSQRELVLNELAADVSYFGSFADAEASGTSEVAIIEFVAAVNATYRSKGSSTIFLPVNFRRVGSVNSTSATNNVGVFHPTRDFDLAPVTWGGLRWQGYGCKGQMYRPIESPCFLERGIPIGMLFVVQDAVHQALMLQAVTLNNEPFGVNVSVDENLVDATAPTAASGVPTAGAIVVGGANTMLEQTLDATPVLVPQQVNTSRQIFKGGILKLAIKIKGWEMPGGWKAYCQSNLPQIMTGSASV
Ga0193712_100000258	F034408	AGG	MQPHDHQIRNLALYAPKIAFGMMAGVPRVPFIADIPIQFSSSTVNAPPVVQNFQNNLTQDTVIERIAYNLGQPNSFPGSPFQSTYFNQLKQSGQIGVGVQMAVYGGPKYNVNDTFTDLGTLADVFAVTWPNGWPLQKQSNVKVSAILTQTPVSVPFNITMTFLGWQFLSKELDDLSDEEARARLRKLGVETPDLKILLSNG
Ga0193712_100000267	F061612	AGGAG	MPKLIHQETMCCGYKKCPELKIFEDGSVELSDNDEEIGSVGTLKLRPEVMSRLVEIYSKI
Ga0193712_100000270	F074512	GGAGG	MSGFLLISALVGATLLVVRSTLFDPIRRIWPALLRCSQCFGTWVGIAASASGVVPVGHGRILDALIVGAATSFLSLLADAVLLYLLGDPSEEPESHAPKTDDSESKDGAQP