NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193723_1126086

Scaffold Ga0193723_1126086


Overview

Basic Information
Taxon OID3300019879 Open in IMG/M
Scaffold IDGa0193723_1126086 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)706
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.987Long. (o)-107.0038Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014924Metagenome259Y
F085833Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0193723_11260861F085833N/AVSSPLLLVVAIFLVAFDFQNLLSWWGGRTIKPGRQTSQDFTIVVPVFGHPRYFDGERLLRHRRRVLIAMEISAPMMAAFADELEADGWNVQRLEVPDPNPA
Ga0193723_11260862F014924AGGAGGMQSAATRGFTVVTVVTLLFTPLWRGHHWVDVLTGKTTETTVVKCQPNEPCPAQKHITKKVLLQHP

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