Scaffold Ga0193723_1044939

Overview

Basic Information

• Taxon OID: 3300019879
• Scaffold ID: Ga0193723_1044939
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1305
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.987
  • Long. (^o): -107.0038
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024394	Metagenome / Metatranscriptome	206	Y
F094274	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193723_10449392	F024394	N/A	MKDIHEVLRRKQARYAQLAKQIEMLQQAAEKLREVAPLLTENDDDDSAILAEVDDDIVQPSAMAAKAASATSNNQTAPAKPVRPPRWP
Ga0193723_10449393	F094274	N/A	MTLQALLVSKDDETSALLGSVLCEFGLGVQCCSYLDAICRVTEQKFDAVIVDYDDPHSAALVLQNASQASSG