Scaffold Ga0193715_1002283

Overview

Basic Information

• Taxon OID: 3300019878
• Scaffold ID: Ga0193715_1002283
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4245
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9355
  • Long. (^o): -106.9424
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022495	Metagenome / Metatranscriptome	214	Y
F029182	Metagenome / Metatranscriptome	189	Y
F063048	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193715_10022831	F029182	N/A	MRNDRSVGSPSRQSADHFREARVVRITLGGFAIWIDPFGMLDPQIVVNLLLEFGVRVDWMRRGNRPR
Ga0193715_10022832	F022495	N/A	MRKLTPTLTQSGLLAVLLQRQRYKISQLARRRAQRNQMRAALWSTLTWPWRALTAPMPVRRSRRAFVGYLPRRS
Ga0193715_10022837	F063048	N/A	MRRAEGCQRSSDYERLDMTADSLTERKSVPKRESARAVDAASLIDNPVSKNN