Basic Information | |
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Taxon OID | 3300019877 Open in IMG/M |
Scaffold ID | Ga0193722_1013057 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2123 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.987 | Long. (o) | -107.0038 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002770 | Metagenome / Metatranscriptome | 531 | Y |
F003044 | Metagenome | 511 | Y |
F004064 | Metagenome | 455 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0193722_10130573 | F004064 | N/A | MRGAFVVQLGPETKPSEGRFEGLAEEVDSGREMRFRSAEELMNFLGQRFELAKGSVDKSRPSSKMEQVPSKKSPSKERNSS |
Ga0193722_10130574 | F002770 | AGGA | MKMIRTQFSGAIVIISLISSCVYLAYGKETPNIYIVRNFSWNDFIAQIASVPHGSPQDSLGKEMLIIQKFLKSHESEVRVGIYDVELFKAIDQARARLQKAGRDLETLRNELSYKEEQARLGR |
Ga0193722_10130575 | F003044 | GGAGG | VQFRTTVTCSKCKQPILSGEGFGFVCFKIPGKEDYRFFHRMSGGADCWEAYLKEDKSE |
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