Scaffold Ga0193744_1022977

Overview

Basic Information

• Taxon OID: 3300019874
• Scaffold ID: Ga0193744_1022977
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1166
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8927
  • Long. (^o): -106.9112
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029527	Metagenome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193744_10229771	F029527	GGAGG	MKPRIAAICAIVAFATCGDRAPAQFPDCAYITLFNPCPVSSETRGDCEPIIDPQVACQDCPPGAGAWWIVNNRKDEEAKVTIRVTLWDRALGTSTFTDQALTLALGETRPLGCSLPAPQPHYTWSIEECQPHSEQVFAREELTPTEKQFADAQDAFLDHVGQLWSANLESQYRQLVPGTVRVELSTSPEGELVKTSVLSNTSNELAAQLIIDAIRPAIRFLATGKSSKITAEVTAFAAEG