Scaffold Ga0193700_1000974

Overview

Basic Information

• Taxon OID: 3300019873
• Scaffold ID: Ga0193700_1000974
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3785
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9203
  • Long. (^o): -106.9486
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F002111	Metagenome / Metatranscriptome	592	Y
F008327	Metagenome / Metatranscriptome	335	Y
F012223	Metagenome / Metatranscriptome	282	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193700_10009741	F012223	N/A	FALVGFIWAWKAGAFHDLERQAAIPLLIEEEDYYTPEWALDEEEWDE
Ga0193700_10009742	F008327	AGGAG	MSMPKGDTPEKVNDFYLYLQGHQQTTHPVQTWHVDWMSLAWLWGFLAVLVVILLLWVRQYRTTRQRTGLYPVDSFGGWTTEGAGPATGFFLLFTAIVVGFAVALIVGHIVWGQKF
Ga0193700_10009743	F002111	AGAAG	MVATSILPFVTYSSMTETLIPAAEWPTVYSSLQALKGHVQEYPGCQGFDVFVRAEGDGDVLVHCYTTWDTAGQLEVFLERGYTFERLLADIGSGISPARSLVMEKVF
Ga0193700_10009744	F000280	AGAAGG	MAQKPDEHPRPTPARPLVGYRDVGEDIRHGRSAITRAWIVLAILIVIYLAWTLTVYFLEPGLR