NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206388_1040300

Scaffold Ga0206388_1040300


Overview

Basic Information
Taxon OID3300019861 Open in IMG/M
Scaffold IDGa0206388_1040300 Open in IMG/M
Source Dataset NameLab enriched sediment microbial communities from oil refinery in Oklahoma, USA - DGG1A 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14814
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From Methanogenic Benzene-Degrading Culture

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)36.0Long. (o)-97.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050777Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0206388_10403009F050777GAGMEDDIICEKAVEILNPGRLYFALNAMRSSPVKISFDMGDLNLTSGPVSSLISIEGDLPEEVQGMQWLVPLEDLLILQDLIPPDTYYWENRALVLQWQCDLVVDSMIDEKSPLETLEQEEAYRDQLLISNREYRELQMALDDCNAHIPQVLFSIYPDRLNFAVNCSEHDEIVGTMIQLKNQKEAR

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