Scaffold Ga0137408_1353841

Overview

Basic Information

• Taxon OID: 3300019789
• Scaffold ID: Ga0137408_1353841
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4289
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000222	Metagenome / Metatranscriptome	1536	Y
F039281	Metagenome / Metatranscriptome	164	Y
F058400	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137408_13538415	F058400	N/A	MPETILNDLCASEITLRYLGLGMAEFHFVLGDPPQAEGRAFSTIGAAAISLRDEACAYYPDSDFARKYGGFVYDHPWPKGR
Ga0137408_13538416	F039281	GAGG	VTRQYSRYGDEATAEGTKRAEELAADGDLGGVAVWLRVIDAIKQLAITAPFGSVH
Ga0137408_13538417	F000222	GGA	MTPSGTRGVLNDAVSIHFPDAALAGAFVSRWCIGYKVETAGGAFRVREDEPAERVAPRLPRTP