Scaffold Ga0137408_1107674

Overview

Basic Information

• Taxon OID: 3300019789
• Scaffold ID: Ga0137408_1107674
• Source Dataset Name: Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3466
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000877	Metagenome / Metatranscriptome	851	Y
F010452	Metagenome / Metatranscriptome	303	Y
F047166	Metagenome / Metatranscriptome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137408_11076742	F010452	GGAG	MELTFRIDSSTREGTFIRVLRDGAPLGKILDAAGLYRFYEGDREALGGGGELHDSNLERLKKAIQSRYEARAR
Ga0137408_11076743	F000877	AGGAGG	MDRGTAMMAVILEIYEGGKDLIPGWDLKEQAEGALATGGIEGLRRYYDAYLARRDHQTKATLERDRRKTLESERERFMSLYLGAAR
Ga0137408_11076746	F047166	GGCGG	MSSRALPPPPCRLAILLGVALCLASGIARADVATIGDMTTCNQEAREGSRNRSASPTSKDQIDAKAARLERDSTPGPPGATTAVTKSEDPQIHGMDAQGATDAAYRAAYRVCMRQRGF