Scaffold Ga0182028_1223824

Overview

Basic Information

• Taxon OID: 3300019788
• Scaffold ID: Ga0182028_1223824
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1499
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000586	Metagenome / Metatranscriptome	1007	Y
F017652	Metagenome / Metatranscriptome	239	Y
F019886	Metagenome / Metatranscriptome	227	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182028_12238241	F019886	N/A	KIPAAEYKRVTVTLPLPQWQRLLAGTPEDARTAVLAGVRKQEISLDLEAIKQALNLEQAVEGADLALNRFKLQVN
Ga0182028_12238243	F017652	AGGTGG	VKPGKEFDCVEMKAEIQERLLREVAELGEDEAQRRRAERLSRDPILGGFLRAKMANGKGSAQHTPAA
Ga0182028_12238244	F000586	N/A	NMNHANPDTMRARARQAIELLKTQLVDTGTVQPLVALYFDDHIEQVQFEDPSVLDQFDIRTARSFDYLRALVGIKAPQAAIMTLDVRMGPFENDEREVLPEQTAIFLMLDSPLLTIQVILPYTRSGGIVAVSGVQYTEMPGTEGTAPCPIFKLFSDAPVGVC