Scaffold Ga0182031_1395083

Overview

Basic Information

• Taxon OID: 3300019787
• Scaffold ID: Ga0182031_1395083
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2219
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023510	Metagenome	209	N
F071899	Metagenome	121	N
F104335	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182031_13950832	F071899	GAGG	MQARVKLTPRIIARLIVGKPVTVNLPAGTSSLFLVTEGKFHEFLRAFHAPEEFDPETSHTEVIGLFDLIFGRH
Ga0182031_13950833	F104335	GAGG	MAFWEVTGTVVTEDNNAVTFRTFVPAEELVDAVNEGLDAIFEIENPEVYDEPETTTNGCFAMAHGLATIEPPPAVNVHVEVHV
Ga0182031_13950837	F023510	N/A	SPNSHIFFKVTAVNPNNYGIPPTTFIVEALNEEAAVECIKRAIWAGILLPHSYNGALNPWPTYFQSNALRYLLDGMFVAEELETLPTLRFFPDPCIRDEWLRYQLSWRARLVEDIQKWWDAMLARPFFTSWFGR