Scaffold Ga0182022_1170534

Overview

Basic Information

• Taxon OID: 3300019785
• Scaffold ID: Ga0182022_1170534
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2921
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007488	Metagenome / Metatranscriptome	350	Y
F008205	Metagenome / Metatranscriptome	337	Y
F009917	Metagenome	311	Y
F064567	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182022_11705343	F064567	GGCGG	MALDAKLMDLARHAAQGEGLDAALVCAVVEQESNWNTWAMRYEPLFFAKYVAPLYTNNKVGATEAYARGMSWD
Ga0182022_11705344	F009917	AGG	MLSLSLRSTAGVLSIGAQFVVFLRWIHRRMRDDEINRVFLRDLALHHLPCIYRALYRMAERQGIALDEMPMVNFVDLQNGGRRR
Ga0182022_11705345	F008205	N/A	VARTQTPGFSDLTDELARQKGRQERARRSRTKTNFANTTMQQQMSALQGLSGLYGVDANLLGKALGIPAELLNVRANASRPSGFFSSLGSSVGGTLGGLPSMFM
Ga0182022_11705347	F007488	GAG	MTLRIREYDEGDLGALRAIMRRRIPLRVSRSAESAILTKLVLADDEKGETEGKGIAGAALLRLTAEAYLLLDPKRGTPKERWQWLLGLHEATRQEAWGRGLEDVHSWLPPEIAAKFGRRLARLGWVRDDEWTPYCKR