Scaffold Ga0182022_1141010

Overview

Basic Information

• Taxon OID: 3300019785
• Scaffold ID: Ga0182022_1141010
• Source Dataset Name: Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1228
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen → Permafrost Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Stordalen
• Coordinates
  • Lat. (^o): 68.35
  • Long. (^o): 19.05

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081241	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0182022_11410102	F081241	GGA	VAQAPALRMYNPVWKGARHMESHDAEKVVPEELPEPDVPVEICRFETDLAFLSEVGRRIAPLAARPGLAPEKARVIERAVAALRKLPELTPGIDLRVEVAHRMGGEDFNESYSYVVKLHPQGVEIASSGTQYDASVGSNSFDLESFKWYADGRVEQQGNRDTWLERLEYAFGRDYTVNATDESAAT