Scaffold Ga0181359_1092440

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1092440
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1120
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024548	Metagenome / Metatranscriptome	205	Y
F044443	Metagenome / Metatranscriptome	154	N
F075707	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10924402	F075707	AGG	MTKLLLGLTILLVVYIIGWHQIYGQFIHSFYKKYEMYLVWLSVPTTLLSIYATKLLAEYFNGKMWPNRIFTFSIGIVMFTILTHIYFNEKLSYKTLTLIALSGLIVILQIIWK
Ga0181359_10924403	F024548	AGGAG	MKSADNIVEVQESELKKYIKLKEGSKIEEGDLVNVYDNTYAELSKGSRVCKEVVNKYNTILRAK
Ga0181359_10924404	F044443	N/A	ILLVMLNRIIEQFKNKFYTALTYLTVVSFMYLIITSIVFAFRHPWATDMERFIHIGDALMFNKISYKEMRGEYEER