Scaffold Ga0181359_1078005

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1078005
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1245
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006546	Metagenome / Metatranscriptome	370	Y
F010915	Metagenome / Metatranscriptome	297	Y
F018368	Metagenome / Metatranscriptome	235	N
F033034	Metagenome / Metatranscriptome	178	Y
F089938	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10780051	F033034	N/A	MKVPKLTKKAQDIVNQIMSADAVDIDHGRIDERVYYGQMHLTGEGLECNVNVDGDMGELIISNESLNAAVVSDGTIEIDGEYIPKNEFGDITITLYKL
Ga0181359_10780052	F018368	N/A	MTITTLTTRGQKISNQIVSADVIEINQGPFSFTALTESITTEEDKIVLKYEVDGEMCNHEITNDMLNNAHVEDGHIVFAWGTQLSISLYKLAVMNAVE
Ga0181359_10780053	F010915	N/A	MKQKLPPHNMVVVVQVGLDLYTLSYVKYEECDIHQCIKYNLSSEDVSQFLGNN
Ga0181359_10780054	F089938	N/A	MLNLDQAFTVQEFVRVNRTKRVWEIQDELYSLICILTKTKEEKKDETETAAA
Ga0181359_10780055	F006546	N/A	MKWKYIGNRTGDAAKGEQYIVEADELTELYMKSVPYPQYVKVYVVQPPSPRNNWSKNNVGDIIKICNPYYEMATYSHPGFVPVKE