Basic Information | |
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Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1077894 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1246 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002009 | Metagenome / Metatranscriptome | 604 | Y |
F007747 | Metagenome / Metatranscriptome | 345 | Y |
F011918 | Metagenome / Metatranscriptome | 285 | Y |
F058800 | Metagenome | 134 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181359_10778941 | F011918 | N/A | SENPQCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL |
Ga0181359_10778942 | F002009 | GGAG | MTAPTIAEMGDAAADIVWRVMGRGSEKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETAADHLERALVRCLFTLAQIKKEVPRL |
Ga0181359_10778944 | F058800 | N/A | MKLALSWVLYWLGDVISRTILRLGIGYGLYKTLMLWSLELDDKFDVWKEVKPKRRKRK |
Ga0181359_10778945 | F007747 | GGAGG | MKDLGKITFGKSRPAPKQILVDVTYDAKTAKALHAFGLKQLKKDQEAVVQYVITKALEGLVKK |
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