Scaffold Ga0181359_1075466

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1075466
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1271
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F001019	Metagenome / Metatranscriptome	804	Y
F037727	Metagenome / Metatranscriptome	167	Y
F062746	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10754661	F062746	N/A	RDDSKLFYLRTPSDLMDKTELRTDLEMAVSFLQGLWAEGYFDNAQI
Ga0181359_10754662	F037727	AGAAGG	MHKSSKFLEYIKLHRISLIQDNENLIQDTNAPDWNFLQGQIIATEHLLSVATDIMNENER
Ga0181359_10754663	F000263	AGG	METLYKDDELPSHLQRLVDAGVNGLDIMHGELKNLMLIAEEQLSWAIDIEKETEEAMDSMSRTECEGRLDTLVELYKLTYDLSFAIGARDEASR
Ga0181359_10754665	F000441	AGGAGG	MKMSDIYINERLNTAQKLLWGGSETENIEAHNIISKLIQDRNAWEEGTNE
Ga0181359_10754666	F001019	AGGAGG	MSNYEPSLEILEVEYSCSPGGIDLFEVYDKSDIPLSVPIYETENLTEAVLFCYNLGKDFTVRTLAEWNERELEYASV