Scaffold Ga0181359_1054694

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1054694
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1536
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003863	Metagenome	464	Y
F015702	Metagenome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10546942	F003212	GAGG	MKDKWLITIEIETYDGDPKSWNWDNLYIGEEDIKIISSDFKGRVLPTEGEDNEL
Ga0181359_10546944	F000821	AGG	MNEEYLKAKVDLCLNLAEEDLKQEEIARAIKNLKRANSALSQLFGFEEETDDN
Ga0181359_10546945	F015702	AGGAGG	MTIKEVELEYTVYNLVRLSEKVWGENAIEYLAGRLESVITYNQMKVLVDSLKKEANE
Ga0181359_10546946	F001477	AGAAGG	MSNVYTIHPPKSDLILFYEVVEAEGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL
Ga0181359_10546947	F003863	GGAGG	MESKEVSGKQAIEYRNYRRARDRALIRLSHLYADAYKQLLVEERELDEQDGKKWVGIPDSTRITITTHTRANAVPDVAGRTDYESAYEGYNGGEA