Scaffold Ga0181359_1042225

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1042225
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1766
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F011646	Metagenome / Metatranscriptome	288	Y
F011756	Metagenome / Metatranscriptome	287	Y
F015702	Metagenome	252	Y
F018703	Metagenome	233	Y
F029021	Metagenome	189	Y
F069714	Metagenome	123	N
F077230	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10422252	F006842	GGAG	MKAIPVICGDHLVPISECDCVNYLQELKTSAERLVQLTKEREEMK
Ga0181359_10422253	F069714	GAGG	MNINIKESYMPEYTKAITFECEGEEYLAEVYVGKNCSDYNLYQGNKKLEDKPAWLEKAELNPEFNFLFFIDELAWEYEAGNSWEVKI
Ga0181359_10422254	F029021	GGAGG	MKEICQFCGWEIARVDWYHRYNDKLICDNCVMDTMSKREREGVSK
Ga0181359_10422255	F015702	AGGGGG	MIKEIELEYTSYNLIKLARDKWGDNATEYLAVALESVITYNQMKVLIDSLKAERTNV
Ga0181359_10422256	F011756	GAG	MSEPRYLMGDEYALNGGYEELVNCKECAVEFDRTEYRSDTCSDCEDKIIAREKESK
Ga0181359_10422257	F011646	AGAAGG	MSNVIELRNGSLKRIIFYEVADPQNIAVWGGESAIEALKWYRNSPNGSRIYVQEWLTDEEDAKQVSSQIEITSIVLSTIANCMDRWV
Ga0181359_10422258	F018703	AGGTGG	MREVERRIETAKAQAVRQRNYRRARDRALARLSNDYPNVYRTYLEEEIEADETMGKKWLDITGRTKPVSNRSR
Ga0181359_10422259	F077230	N/A	LILLVALNLLVIGQDKLFPPPVGRIPDGVIENRKATKDEKDYNKKLAKDYAAAGWGWSGRESECLITLWTRES