Scaffold Ga0181359_1041135

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1041135
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1790
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008552	Metagenome	331	Y
F013087	Metagenome	274	Y
F033803	Metagenome	176	N
F084238	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10411352	F013087	N/A	MEPTVWIYFSKTGTGYELKGSDIISGFDAFIHSDGTYMVEYAFSDMKNSMHFFIYEWDNTQKKRRTIFEGYQRENILVNFAKNVDICHLVRQAIYKEYLMDNEELELEKNANS
Ga0181359_10411353	F008552	N/A	MSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIRENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDVEQQKFTYVFKRNFQAGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDARFIDTIQNQYIKHQENMVN
Ga0181359_10411354	F033803	N/A	MTINLRKNIARFIYIIDQTTNVDSRANILKELDLTENEFQELVSNLLQFSNSDNREFYCCNPEYHGFIETFKIISEKTETEFLI
Ga0181359_10411355	F084238	N/A	SETVKQMADDLEATEWRDSYIQNYDIEEQEFKDLVRMFRLHADAGHYLLAWY