Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1040024 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1040024 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	1816
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

1816

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F003304	Metagenome	494	N
F011918	Metagenome / Metatranscriptome	285	Y
F021063	Metagenome / Metatranscriptome	220	N
F033721	Metagenome / Metatranscriptome	176	Y
F039993	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10400241	F021063	GGAG	VRSTQLCRGDYDDRLQQLAGEVALQAIRDLRLLRKRGMVKGMKIVKDHQGVPLNDALEYKSSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLQ
Ga0181359_10400242	F003304	AGGA	MKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGMIEPKFYVNTGVFVIHTKAVGVLSMPPIGLHPNHFAEQTWLNVMAHLWEIPLTDLDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNNLDKLTTTIAADDAKLVELGR
Ga0181359_10400243	F039993	N/A	MKFVLSWLLYHLGDIVSLTLMRWGYGYGFYNKVMLLSSDLDEHGKIWKDAK
Ga0181359_10400244	F033721	AGGA	MMWIKKEFDDDGKPEWAVYIDEAGEGREEDWSHYDTFDSRDEAIKGCRSVTWEDYDCSDK
Ga0181359_10400245	F002009	GGAG	MTAPSIAEMGDAAGEIIWRVMGKGSDKSAYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRTLFVLAQIKKEVPRL
Ga0181359_10400246	F011918	N/A	NPKAAGVSIVLASNDSSKIMTKVWDKDELYQAGIAFCAMQKVWSWVKGYTPPGMKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1040024

Overview

Ecosystem & Geography

Associated Families

Sequences