Scaffold Ga0181359_1039360

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1039360
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1831
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F019834	Metagenome	227	N
F027179	Metagenome	195	Y
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10393601	F027179	N/A	MRMPTLKSEKFIYMADGLFLYEKENSYVVMDQNDNVLKELKTSTSCARYILKTLQSRRAAEREAIEEINKSKV
Ga0181359_10393602	F019834	GAGG	MKELKFTITGTIFVPDNAEYENDFENQIYSFKIGDEAYSLIAGLWTDEKEIILTDENFKSHNILPVQYEDAYFEE
Ga0181359_10393603	F002406	GGA	MSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE
Ga0181359_10393604	F010618	GAGG	MTLKDLILKLQELDKKYEQYSKDTEVVIAVHSKNEYNPEVSLDYIDEVLHPALDTYSGYICRIVLCGEIEQED
Ga0181359_10393606	F105155	N/A	MYAMMMQNFLKTSAAKQLSAEIKYLEWDQVTFNFYHKSYKGYDFYKRNISLNYWQYTVTSDITSCTFKVYEKRAKNAKLGNE