Scaffold Ga0181359_1034589

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1034589
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1956
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F034044	Metagenome	175	Y
F072298	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10345892	F072298	AGGA	MRAIVKAALDIPEMIFAFETICEDDKKEPSDYTDEEIVSEAEYRLMTYFESGHINDDMRTDDEGVGQKVALKDIRMLKAFIKRYKTAEGQWSKYTNHLIK
Ga0181359_10345894	F004450	GAGG	MSWVAAVLVAIVMSAAYLLDGPSEHEAQVDTVEEKIQRLCGENAGWKLLDDGSVQCFTHRGAKTRRVAL
Ga0181359_10345896	F034044	GGA	MTQDDIIKMADASGLSHYGMGKDRDRFLHHVETFADLVGLAEREACAKLCEAQGEYGWQKYAAAIRARGNMRGCDD