Scaffold Ga0181359_1031938

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1031938
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2036
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F029021	Metagenome	189	Y
F053128	Metagenome	141	N
F075713	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10319384	F053128	GAGG	MKGYFVIDRQDTGWKEGYLWKSIKEIADSIRDYDDYRELEISDLTHSQVCELWDFEYHRLTPANCNKYGVRPSELTREYL
Ga0181359_10319385	F006842	GGAG	MSYTPAICGDHLVPISECDCLSYMREIESSAKRLIQLAKEREEMK
Ga0181359_10319387	F029021	GGAGG	MKELCQFCGWEIARVDWYHRYNGKLICDNCVMDTMSERERENVK
Ga0181359_10319388	F075713	GGAG	MKVKDVLEALNGLPLEEMVAIQWYTKDDIELNLQRKITREVWEEVCEYACDEPDMRDFSIPYLLERAERDNE