Scaffold Ga0181359_1027770

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1027770
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2174
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Priestia → Priestia aryabhattai (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039104	Metagenome / Metatranscriptome	164	Y
F045761	Metagenome	152	N
F095138	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10277701	F095138	N/A	PFNSGNHLQNSFITNNEQLKSKRPEYYWQVQMGMVATEMTEALFLSYDPRMPIGKKLTQTLITLEEDIQEIIDEKLASAGELFLSITK
Ga0181359_10277704	F045761	AGGA	MIQNYLIIGMAILFVITLLQLHKTTEREDELLKTISNKNRLIWDYETELLEIRSKIAEANDRAKTWELQATFLKELQDDKPKSTRNKSINK
Ga0181359_10277705	F039104	N/A	MTNLKALVIRASINEIVKWRVYFAGQLLATFENEQDAMEYAEFIDRQ